From 759271b6a144d4823c37b1060f6772020d60f39c Mon Sep 17 00:00:00 2001 From: Alexander Hess Date: Tue, 28 Jan 2020 13:07:53 +0100 Subject: [PATCH] Update pyproject.toml, poetry.lock, requirements.txt - use JupyterLab instead of just Jupyter - update dependencies --- poetry.lock | 814 ++++++++++++++++++++++++++++++++--------------- pyproject.toml | 13 +- requirements.txt | 74 ++--- 3 files changed, 595 insertions(+), 306 deletions(-) diff --git a/poetry.lock b/poetry.lock index ad1610a..07e1126 100644 --- a/poetry.lock +++ b/poetry.lock @@ -9,7 +9,7 @@ version = "1.4.3" [[package]] category = "main" description = "Disable App Nap on OS X 10.9" -marker = "python_version >= \"3.3\" and sys_platform == \"darwin\" or sys_platform == \"darwin\"" +marker = "sys_platform == \"darwin\" or platform_system == \"Darwin\"" name = "appnope" optional = false python-versions = "*" @@ -21,7 +21,13 @@ description = "Classes Without Boilerplate" name = "attrs" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "19.1.0" +version = "19.3.0" + +[package.extras] +azure-pipelines = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "pytest-azurepipelines"] +dev = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "sphinx", "pre-commit"] +docs = ["sphinx", "zope.interface"] +tests = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] [[package]] category = "main" @@ -37,13 +43,19 @@ description = "The uncompromising code formatter." name = "black" optional = false python-versions = ">=3.6" -version = "18.9b0" +version = "19.10b0" [package.dependencies] appdirs = "*" -attrs = ">=17.4.0" +attrs = ">=18.1.0" click = ">=6.5" +pathspec = ">=0.6,<1" +regex = "*" toml = ">=0.9.4" +typed-ast = ">=1.4.0" + +[package.extras] +d = ["aiohttp (>=3.3.2)", "aiohttp-cors"] [[package]] category = "dev" @@ -80,19 +92,19 @@ version = "7.0" [[package]] category = "main" description = "Cross-platform colored terminal text." -marker = "python_version >= \"3.3\" and sys_platform == \"win32\" or sys_platform == \"win32\"" +marker = "sys_platform == \"win32\"" name = "colorama" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "0.4.1" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.4.3" [[package]] category = "main" -description = "Better living through Python with decorators" +description = "Decorators for Humans" name = "decorator" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*" -version = "4.4.0" +version = "4.4.1" [[package]] category = "main" @@ -110,27 +122,47 @@ optional = false python-versions = ">=2.7" version = "0.3" +[[package]] +category = "main" +description = "Read metadata from Python packages" +marker = "python_version < \"3.8\"" +name = "importlib-metadata" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +version = "1.4.0" + +[package.dependencies] +zipp = ">=0.5" + +[package.extras] +docs = ["sphinx", "rst.linker"] +testing = ["packaging", "importlib-resources"] + [[package]] category = "main" description = "IPython Kernel for Jupyter" name = "ipykernel" optional = false python-versions = ">=3.4" -version = "5.1.2" +version = "5.1.4" [package.dependencies] +appnope = "*" ipython = ">=5.0.0" jupyter-client = "*" tornado = ">=4.2" traitlets = ">=4.1.0" +[package.extras] +test = ["pytest", "pytest-cov", "flaky", "nose"] + [[package]] category = "main" description = "IPython: Productive Interactive Computing" name = "ipython" optional = false -python-versions = ">=3.5" -version = "7.8.0" +python-versions = ">=3.6" +version = "7.11.1" [package.dependencies] appnope = "*" @@ -140,11 +172,22 @@ decorator = "*" jedi = ">=0.10" pexpect = "*" pickleshare = "*" -prompt-toolkit = ">=2.0.0,<2.1.0" +prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" setuptools = ">=18.5" traitlets = ">=4.2" +[package.extras] +all = ["ipywidgets", "ipyparallel", "qtconsole", "ipykernel", "nbconvert", "notebook", "nbformat", "testpath", "pygments", "requests", "numpy (>=1.14)", "nose (>=0.10.1)", "Sphinx (>=1.3)"] +doc = ["Sphinx (>=1.3)"] +kernel = ["ipykernel"] +nbconvert = ["nbconvert"] +nbformat = ["nbformat"] +notebook = ["notebook", "ipywidgets"] +parallel = ["ipyparallel"] +qtconsole = ["qtconsole"] +test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.14)"] + [[package]] category = "main" description = "Vestigial utilities from IPython" @@ -153,53 +196,50 @@ optional = false python-versions = "*" version = "0.2.0" -[[package]] -category = "main" -description = "IPython HTML widgets for Jupyter" -name = "ipywidgets" -optional = false -python-versions = "*" -version = "7.5.1" - -[package.dependencies] -ipykernel = ">=4.5.1" -nbformat = ">=4.2.0" -traitlets = ">=4.3.1" -widgetsnbextension = ">=3.5.0,<3.6.0" - -[package.dependencies.ipython] -python = ">=3.3" -version = ">=4.0.0" - [[package]] category = "main" description = "An autocompletion tool for Python that can be used for text editors." name = "jedi" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "0.15.1" +version = "0.16.0" [package.dependencies] -parso = ">=0.5.0" +parso = ">=0.5.2" + +[package.extras] +qa = ["flake8 (3.7.9)"] +testing = ["colorama (0.4.1)", "docopt", "pytest (>=3.9.0,<5.0.0)"] [[package]] category = "main" -description = "A small but fast and easy to use stand-alone template engine written in pure python." +description = "A very fast and expressive template engine." name = "jinja2" optional = false -python-versions = "*" -version = "2.10.1" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "2.11.0" [package.dependencies] MarkupSafe = ">=0.23" +[package.extras] +i18n = ["Babel (>=0.8)"] + +[[package]] +category = "main" +description = "A Python implementation of the JSON5 data format." +name = "json5" +optional = false +python-versions = "*" +version = "0.8.5" + [[package]] category = "main" description = "An implementation of JSON Schema validation for Python" name = "jsonschema" optional = false python-versions = "*" -version = "3.0.2" +version = "3.2.0" [package.dependencies] attrs = ">=17.4.0" @@ -207,21 +247,13 @@ pyrsistent = ">=0.14.0" setuptools = "*" six = ">=1.11.0" -[[package]] -category = "main" -description = "Jupyter metapackage. Install all the Jupyter components in one go." -name = "jupyter" -optional = false -python-versions = "*" -version = "1.0.0" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" -[package.dependencies] -ipykernel = "*" -ipywidgets = "*" -jupyter-console = "*" -nbconvert = "*" -notebook = "*" -qtconsole = "*" +[package.extras] +format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"] +format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"] [[package]] category = "main" @@ -229,67 +261,18 @@ description = "Jupyter protocol implementation and client libraries" name = "jupyter-client" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "5.3.2" +version = "5.3.4" [package.dependencies] -jupyter-core = "*" +jupyter-core = ">=4.6.0" python-dateutil = ">=2.1" pywin32 = ">=1.0" pyzmq = ">=13" tornado = ">=4.1" traitlets = "*" -[[package]] -category = "main" -description = "Jupyter terminal console" -name = "jupyter-console" -optional = false -python-versions = ">=3.5" -version = "6.0.0" - -[package.dependencies] -ipykernel = "*" -ipython = "*" -jupyter-client = "*" -prompt-toolkit = ">=2.0.0,<2.1.0" -pygments = "*" - -[[package]] -category = "dev" -description = "Common utilities for jupyter-contrib projects." -name = "jupyter-contrib-core" -optional = false -python-versions = "*" -version = "0.3.3" - -[package.dependencies] -jupyter-core = "*" -notebook = ">=4.0" -setuptools = "*" -tornado = "*" -traitlets = "*" - -[[package]] -category = "dev" -description = "A collection of Jupyter nbextensions." -name = "jupyter-contrib-nbextensions" -optional = false -python-versions = "*" -version = "0.5.1" - -[package.dependencies] -ipython-genutils = "*" -jupyter-contrib-core = ">=0.3.3" -jupyter-core = "*" -jupyter-highlight-selected-word = ">=0.1.1" -jupyter-latex-envs = ">=1.3.8" -jupyter-nbextensions-configurator = ">=0.4.0" -lxml = "*" -nbconvert = ">=4.2" -notebook = ">=4.0" -pyyaml = "*" -tornado = "*" -traitlets = ">=4.1" +[package.extras] +test = ["ipykernel", "ipython", "mock", "pytest"] [[package]] category = "main" @@ -297,57 +280,46 @@ description = "Jupyter core package. A base package on which Jupyter projects re name = "jupyter-core" optional = false python-versions = ">=2.7, !=3.0, !=3.1, !=3.2" -version = "4.5.0" +version = "4.6.1" [package.dependencies] +pywin32 = ">=1.0" traitlets = "*" [[package]] -category = "dev" -description = "Jupyter notebook extension that enables highlighting every instance of the current word in the notebook." -name = "jupyter-highlight-selected-word" +category = "main" +description = "The JupyterLab notebook server extension." +name = "jupyterlab" optional = false -python-versions = "*" -version = "0.2.0" - -[[package]] -category = "dev" -description = "Jupyter notebook extension which supports (some) LaTeX environments within markdown cells. Also provides support for labels and crossreferences, document wide numbering, bibliography, and more..." -name = "jupyter-latex-envs" -optional = false -python-versions = "*" -version = "1.4.6" +python-versions = ">=3.5" +version = "1.2.6" [package.dependencies] -ipython = "*" -jupyter_core = "*" -nbconvert = "*" -notebook = ">=4.0" -traitlets = ">=4.1" +jinja2 = ">=2.10" +jupyterlab-server = ">=1.0.0,<1.1.0" +notebook = ">=4.3.1" +tornado = "<6.0.0 || >6.0.0,<6.0.1 || >6.0.1,<6.0.2 || >6.0.2" + +[package.extras] +docs = ["sphinx", "recommonmark", "sphinx-rtd-theme", "sphinx-copybutton"] +test = ["pytest", "pytest-check-links", "requests"] [[package]] -category = "dev" -description = "jupyter serverextension providing configuration interfaces for nbextensions." -name = "jupyter-nbextensions-configurator" +category = "main" +description = "JupyterLab Server" +name = "jupyterlab-server" optional = false -python-versions = "*" -version = "0.4.1" +python-versions = ">=3.5" +version = "1.0.6" [package.dependencies] -jupyter_contrib_core = ">=0.3.3" -jupyter_core = "*" -notebook = ">=4.0" -pyyaml = "*" -tornado = "*" -traitlets = "*" +jinja2 = ">=2.10" +json5 = "*" +jsonschema = ">=3.0.1" +notebook = ">=4.2.0" -[[package]] -category = "dev" -description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -name = "lxml" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" -version = "4.4.1" +[package.extras] +test = ["pytest", "requests"] [[package]] category = "main" @@ -371,7 +343,7 @@ description = "Converting Jupyter Notebooks" name = "nbconvert" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "5.6.0" +version = "5.6.1" [package.dependencies] bleach = "*" @@ -386,13 +358,20 @@ pygments = "*" testpath = "*" traitlets = ">=4.2" +[package.extras] +all = ["pytest", "pytest-cov", "ipykernel", "jupyter-client (>=5.3.1)", "ipywidgets (>=7)", "pebble", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "sphinxcontrib-github-alt", "ipython", "mock"] +docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "sphinxcontrib-github-alt", "ipython", "jupyter-client (>=5.3.1)"] +execute = ["jupyter-client (>=5.3.1)"] +serve = ["tornado (>=4.0)"] +test = ["pytest", "pytest-cov", "ipykernel", "jupyter-client (>=5.3.1)", "ipywidgets (>=7)", "pebble", "mock"] + [[package]] category = "main" description = "The Jupyter Notebook format" name = "nbformat" optional = false -python-versions = "*" -version = "4.4.0" +python-versions = ">=3.5" +version = "5.0.4" [package.dependencies] ipython-genutils = "*" @@ -400,21 +379,24 @@ jsonschema = ">=2.4,<2.5.0 || >2.5.0" jupyter-core = "*" traitlets = ">=4.1" +[package.extras] +test = ["testpath", "pytest", "pytest-cov"] + [[package]] category = "main" description = "A web-based notebook environment for interactive computing" name = "notebook" optional = false python-versions = ">=3.5" -version = "6.0.1" +version = "6.0.3" [package.dependencies] Send2Trash = "*" ipykernel = "*" ipython-genutils = "*" jinja2 = "*" -jupyter-client = ">=5.3.1" -jupyter-core = ">=4.4.0" +jupyter-client = ">=5.3.4" +jupyter-core = ">=4.6.1" nbconvert = "*" nbformat = "*" prometheus-client = "*" @@ -423,13 +405,16 @@ terminado = ">=0.8.1" tornado = ">=5.0" traitlets = ">=4.2.1" +[package.extras] +test = ["nose", "coverage", "requests", "nose-warnings-filters", "nbval", "nose-exclude", "selenium", "pytest", "pytest-cov", "nose-exclude"] + [[package]] category = "main" description = "NumPy is the fundamental package for array computing with Python." name = "numpy" optional = false python-versions = ">=3.5" -version = "1.17.2" +version = "1.18.1" [[package]] category = "main" @@ -444,17 +429,28 @@ category = "main" description = "A Python Parser" name = "parso" optional = false -python-versions = "*" -version = "0.5.1" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "0.6.0" + +[package.extras] +testing = ["docopt", "pytest (>=3.0.7)"] + +[[package]] +category = "dev" +description = "Utility library for gitignore style pattern matching of file paths." +name = "pathspec" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.7.0" [[package]] category = "main" description = "Pexpect allows easy control of interactive console applications." -marker = "python_version >= \"3.3\" and sys_platform != \"win32\" or sys_platform != \"win32\"" +marker = "sys_platform != \"win32\"" name = "pexpect" optional = false python-versions = "*" -version = "4.7.0" +version = "4.8.0" [package.dependencies] ptyprocess = ">=0.5" @@ -475,22 +471,24 @@ optional = false python-versions = "*" version = "0.7.1" +[package.extras] +twisted = ["twisted"] + [[package]] category = "main" description = "Library for building powerful interactive command lines in Python" name = "prompt-toolkit" optional = false -python-versions = "*" -version = "2.0.9" +python-versions = ">=3.6" +version = "3.0.3" [package.dependencies] -six = ">=1.9.0" wcwidth = "*" [[package]] category = "main" description = "Run a subprocess in a pseudo terminal" -marker = "sys_platform != \"win32\" or os_name != \"nt\" or python_version >= \"3.3\" and sys_platform != \"win32\"" +marker = "sys_platform != \"win32\" or os_name != \"nt\"" name = "ptyprocess" optional = false python-versions = "*" @@ -502,7 +500,7 @@ description = "Pygments is a syntax highlighting package written in Python." name = "pygments" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.4.2" +version = "2.5.2" [[package]] category = "main" @@ -510,7 +508,7 @@ description = "Persistent/Functional/Immutable data structures" name = "pyrsistent" optional = false python-versions = "*" -version = "0.15.4" +version = "0.15.7" [package.dependencies] six = "*" @@ -520,8 +518,8 @@ category = "main" description = "Extensions to the standard Python datetime module" name = "python-dateutil" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" -version = "2.8.0" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" +version = "2.8.1" [package.dependencies] six = ">=1.5" @@ -533,7 +531,7 @@ marker = "sys_platform == \"win32\"" name = "pywin32" optional = false python-versions = "*" -version = "225" +version = "227" [[package]] category = "main" @@ -542,15 +540,7 @@ marker = "os_name == \"nt\"" name = "pywinpty" optional = false python-versions = "*" -version = "0.5.5" - -[[package]] -category = "dev" -description = "YAML parser and emitter for Python" -name = "pyyaml" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "5.1.2" +version = "0.5.7" [[package]] category = "main" @@ -558,23 +548,15 @@ description = "Python bindings for 0MQ" name = "pyzmq" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*" -version = "18.1.0" +version = "18.1.1" [[package]] -category = "main" -description = "Jupyter Qt console" -name = "qtconsole" +category = "dev" +description = "Alternative regular expression module, to replace re." +name = "regex" optional = false python-versions = "*" -version = "4.5.5" - -[package.dependencies] -ipykernel = ">=4.1" -ipython-genutils = "*" -jupyter-client = ">=4.1" -jupyter-core = "*" -pygments = "*" -traitlets = "*" +version = "2020.1.8" [[package]] category = "dev" @@ -582,7 +564,7 @@ description = "Reveal.js - Jupyter/IPython Slideshow Extension" name = "rise" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4" -version = "5.5.1" +version = "5.6.0" [package.dependencies] notebook = ">=5.5.0" @@ -600,8 +582,8 @@ category = "main" description = "Python 2 and 3 compatibility utilities" name = "six" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*" -version = "1.12.0" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +version = "1.14.0" [[package]] category = "main" @@ -609,7 +591,7 @@ description = "Terminals served to xterm.js using Tornado websockets" name = "terminado" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "0.8.2" +version = "0.8.3" [package.dependencies] ptyprocess = "*" @@ -622,7 +604,10 @@ description = "Test utilities for code working with files and commands" name = "testpath" optional = false python-versions = "*" -version = "0.4.2" +version = "0.4.4" + +[package.extras] +test = ["pathlib2"] [[package]] category = "dev" @@ -646,20 +631,31 @@ description = "Traitlets Python config system" name = "traitlets" optional = false python-versions = "*" -version = "4.3.2" +version = "4.3.3" [package.dependencies] decorator = "*" ipython-genutils = "*" six = "*" +[package.extras] +test = ["pytest", "mock"] + +[[package]] +category = "dev" +description = "a fork of Python 2 and 3 ast modules with type comment support" +name = "typed-ast" +optional = false +python-versions = "*" +version = "1.4.1" + [[package]] category = "main" description = "Measures number of Terminal column cells of wide-character codes" name = "wcwidth" optional = false python-versions = "*" -version = "0.1.7" +version = "0.1.8" [[package]] category = "main" @@ -671,78 +667,376 @@ version = "0.5.1" [[package]] category = "main" -description = "IPython HTML widgets for Jupyter" -name = "widgetsnbextension" +description = "Backport of pathlib-compatible object wrapper for zip files" +marker = "python_version < \"3.8\"" +name = "zipp" optional = false -python-versions = "*" -version = "3.5.1" +python-versions = ">=3.6" +version = "2.1.0" -[package.dependencies] -notebook = ">=4.4.1" +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] +testing = ["jaraco.itertools"] [metadata] -content-hash = "7c3d541c65a27324b49fc7ed2b84067e223eb4e20c20310ff9e485b016f65f91" -python-versions = "^3.6" +content-hash 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