Add rpy2 to the dependencies
- add a Jupyter notebook that allows to install all project-external dependencies regarding R and R packages - adjust the GitHub Action workflow to also install R and the R packages used within the project - add a `init_r` module that initializes all R packages globally once the `urban_meal_delivery` package is imported
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10 changed files with 2152 additions and 52 deletions
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@ -69,6 +69,8 @@ class Config:
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ALEMBIC_TABLE = 'alembic_version'
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ALEMBIC_TABLE_SCHEMA = 'public'
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R_LIBS_PATH = os.getenv('R_LIBS')
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def __repr__(self) -> str:
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"""Non-literal text representation."""
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return '<configuration>'
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@ -117,6 +119,12 @@ def make_config(env: str = 'production') -> Config:
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if config.DATABASE_URI is None and not os.getenv('TESTING'):
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warnings.warn('Bad configurartion: no DATABASE_URI set in the environment')
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# Some functionalities require R and some packages installed.
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# To ensure isolation and reproducibility, the projects keeps the R dependencies
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# in a project-local folder that must be set in the environment.
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if config.R_LIBS_PATH is None and not os.getenv('TESTING'):
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warnings.warn('Bad configuration: no R_LIBS set in the environment')
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return config
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